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2024 Progress Report
… Revio. They enable increased capacities and faster sequencing, and at the same time help us manage costs. We have also scaled DNA-affinity purification sequencing (DAP-seq),  stable isotope probing (SIP) and … and we continue to develop new capabilities in single-cell sequencing, spatial transcriptomics, and cell- and cell-free …
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JGI announces 2025 Functional Genomics awardees
… project goals range from engineering drought-tolerant woody bioenergy crops through transcriptional network …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… to Database/Java Based Process in Gold Sandra Hernandez Gonzalez and mentor Hualan Liu, Building Expression Host in … And we’ve been working on isolating and cultivating and sequencing extremophile protists from a hypersaline alkaline lake in California. Sandra Hernandez Gonzalez : Out of this internship, I hope to gain professional …
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Computationally Classifying Fungal Lifestyles
… supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as … 1000 Fungal Genomes Project supported by the JGI Community Sequencing Project # 662 . …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data. Trained on numerous versions of genes and enzymes, GenomeOcean can generate diverse types of enzyme genes, or numerous variants of one gene, enabling … Institute (JBEI), because they really want to design new enzymes, new pathways and solve challenging environmental …
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Eelgrass Proves to Be Much Younger Than We Thought
… duplication event — bioinformatics expertise, as well as sequencing for all global populations of eelgrass used in … US Department of Energy Joint Genome Institute Community Sequencing Program (CSP 502951, 2016, Population and …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… “Not only do you not know in which direction the enzyme these genes encode are used — so producing methane or … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying … methane, so to speak. These organisms basically need two enzymes.” These microbes are specialized to use very specific …
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Fungal Friends or Foes in Plant Roots
… The sequencing project was funded by the U.S. Department of … within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant Dikaria”. This work was …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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An Integrated Dataset to Understand Ecosystem Interaction
… generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… reference genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of …
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