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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … are at fending off the infection, and how long this evolutionary arms race has been going on.  Answering these … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … than its partner brown rots. The team’s results reflect the evolutionary gains and losses of S. lacrymans var. lacrymans …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through … synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an … tracking, and enables efficient analysis and reporting of sequencing projects and their status. Mr. Shahab has … BS in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, …
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JGI Workshop at SIMB NP Meeting
… Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … more near-complete genomes from soil metagenomes compared to other methods. The Impact Understanding how … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … parasitic archaea. However, when  Ca . Altiarchaeum harbored self-targeting CRISPR systems, metabolic modeling showed …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … Robert Riley, Jasmyn Pangilinan, Kurt LaButti Project:  Prediction and Identification of Mitochondrial Plasmids from …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed these viruses …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … Collaborations for User Science” (FICUS) program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with … develop presentation skills as well as build their network in the field of genomics and scientific research. The topics …
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