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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… processes was of high interest for the visitors, who saw the latest advancements in imaging-related technology … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are … Probst, initiator of the meeting and long-standing, successful JGI user, has now become an affiliate scientist at …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work … The Impact The Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) was enacted by Congress … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … so researchers around the world would have better, easier access to these viral genomes. The new database was called … ecosystems all over the world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … — from these environmental samples,” said Matthias Hess, first author on the paper and now an associate professor and … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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A Natural Mechanism Can Turbocharge Viral Evolution
… microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus and microbial … in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, called … number of microbial genomes. That means that those viruses accessed many more potential microbial cells or hosts. This …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Nikos Kyrpides (Biology and Biochemistry)  Dan Rokhsar (Cross-field)  Simon Roux (Cross-field)  Jeremy Schmutz … The study was featured on the  New York Times 2022 List of Firsts as well as other year-end science discovery lists.  … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …
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Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
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Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach
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Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community out in its … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for … said. “However, our experiments to test that were unsuccessful — which doesn’t necessarily mean they can’t do it, …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… the Battle of Helm’s Deep. The army of the dark wizard Saruman repeatedly tried to break through, finally resorting to explosives to succeed. Altiarchaea, like the Hornburg, have a history of … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria …
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