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I-Min (Amy) Chen
… management and analysis system v.7.0: content updates and new features. Nucleic acids research Jan 2023 Camargo AP, …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … (up to 120 sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all … installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley Lab …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … to reconstruct and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and to … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …
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W. Berkeley Kauffman
… user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Igor Grigoriev
CA … Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson … et al (2017) A parts list for fungal cellulosomes revealed by comparative genomics.  Nature Microbio 2:17087. Mondo et … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …
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Three Join the JGI User Executive Committee
JGI User Executive Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific … early career success, and is currently a PI for both CSP New Investigator and large-scale CSP projects. Wilbanks has … for programs supporting early career researchers and new users, advise on data release and sharing policies, and …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… last 40 years, summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. … Researchers studied P. psychrophila’ s stress response by comparing how it responded to being moved to a … the adaptive mechanisms of Arctic microalgae but also opens new avenues for utilizing these organisms in sustainable …
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Effects of Polar Light Cycle on Microbial Food Web
… microbial populations in other Antarctic lakes and the nearby Southern Ocean shift from phototrophs to archaea when … evolved separately from other similar systems, and offers new clues into a unique environment in the natural world. … Ocean roughly 5-7,000 years ago and has been well-studied by many researchers for nearly five decades. In these frigid …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … Institute is a DOE Bioenergy Research Center managed by Berkeley Lab. For more information, please visit  …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… to achieve, they constantly collaborated with each other on new ways of presenting and researching science. …
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