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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … hundreds of community members in their neighborhoods and nearby forests with the right tools to track infection. The …
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JGI Announces 2025 New Investigator Portfolio
… Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … artificial intelligence to decode the language of protein sequences and obtain hints of their possible functions. Yet …
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three … .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic soil samples from the four …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  (LBNL and … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … the Desert Research Institute. Metagenomic and single-cell sequence data have provided a means to access novel …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program …
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