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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … bacteria, archaea and fungi. We thought this kind of analysis would provide a framework for the evolution of this … of these enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, …
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
…   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an allodiploid hybrid … applications. Engineers could manipulate these natural systems to tune gene activity without permanently altering …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … do on the leaf surface. More specifically, they found that microbial community composition and functional potential … analysis of mobile genetic elements across all of the metagenomes. Learn more about her time at the JGI here . Bennett …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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Massie S. Ballon
… and outreach efforts, the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. … manager for over a decade. Her portfolio spans a wide range of topics beyond translating science, including crafting …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on the 4X variety, largely because it’s been prioritized in …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns … also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data via …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave event in the ocean known as “The … supported by the Danish Research Council (grant DFF-7027-00043B) and CTEK by the Tula Foundation. …
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JGI Announces 2026 New Investigator Portfolio
… Kumar Gautam, Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, … metatranscriptomics and genome assembly to investigate microbial and plant metabolism across diverse ecosystems — from Antarctic soils and Icelandic hydrothermal …
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