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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do you offer scholarships and/or …
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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., … of microbial single-cell sequencing. Nat Methods 14(11): 1045-1054 (2017). Schulz F., Yutin N., Ivanova N. N., …
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Exploring Phages at JGI
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Natural Prodcast Episode 3: The Primer, Part 3
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …
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JGI@25: Roots of a Mutualist Relationship
… with poplar … Fungal Datasets … Genome Inside: THE Bioenergy Tree …
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Cracking the Secrets of the Diatom’s Shell
… biobased economy. They conduct research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Ben Bowen
… and Environmental Research user community in their bioenergy and environmental objectives. … BS – University of … using mass spectrometry imaging. Analytical chemistry, 89(11), 5818–5823. Baran, R., Brodie, E., Mayberry-Lewis, J., … S., Bowen, B., Chao, Y., Reindl, W., Lee, D., & others (2011). Conserved features of cancer cells define their …
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Jeremy Schmutz
… 2021. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature 590: 438-444. Mamidi, S et al. …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …
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David Goodstein
… gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of Plant Biology 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution … hybridum and its diploid progenitors. Nature Communications 11, 1. Gordon et al., 2017.  Extensive gene content …
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