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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Game On: High School Students Drive Everglades Metagenomics Study
… sampling in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the … out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated …
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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … that harvest light, transport molecules and regulate reactions. Identifying these proteins and then figuring out … that photosynthesizers share. The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … they asked – and answered – in the study that recently appeared in the Proceedings of the National Academy of Sciences … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel …
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the … understanding the capabilities and resources available for your project. Watch all the webinars here . You can find … … … Shining a Light: Advanced Photon Source Capabilities for FICUS Research shows researchers how to tap into the …
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … here.” Mentor: Lorenzo Aureli Project: “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Fungal Friends or Foes in Plant Roots
… plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … and enabling future metagenomics studies.   … The sequencing project was funded by the U.S. Department of …
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