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Major impacts of widespread structural variation on sorghum.
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JGI Early Career Researchers Featured in mSystems Special Issue
… biogeochemical cycles, viruses infecting microbes shape global ecological and environmental processes, especially by … host cell metabolism and altering cell fitness. As the vast majority of viruses remain uncultivated, Roux outlines … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … of the uncovered viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” … in RNA without a DNA stage. “I would argue RNA viruses globally are even less known than DNA viruses,” said Simon …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… great science that will help solve energy and environmental challenges.   Scanning the California oak woodlands from the … SOD. Of the dozens of Phytophthora species, the most globally-recognizable relative of SOD is P. infestans , … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest for … that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest …
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Emiley Eloe-Fadrosh
Click to learn more about the program's areas of focus, major initiatives and more.  … BS, Biochemistry and Cell … Nature Microbiol. 1: 15032. Eloe-Fadrosh EA, et al. 2016. Global metagenomic survey reveals a new bacterial candidate … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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Tour the IGB
Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … to deciphering metabolic and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell …
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Tapping the treasure trove of atypical phages
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … Blaise Pascal, France … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of bacteriophages. … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look … American Pima ( G. barbadense .) These are two of the five major lineages of cotton;  G. tomentosum ,  G. mustelinum , … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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