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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to … home. Or actually not my room, it’s the room of my little baby daughter, who inherited this room from her sister. And it …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … species, and also provides more information about speciation events. …
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JGI on the 2021 Highly Cited Researchers List
… Researchers at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant … influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … has focused on producing high-quality reference genomes. By cataloguing a genome sequence for a line of sorghum, … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … While are still working on finalizing the tree and related publication the tree is still in development and not … Q: Is there any possibility to search for genes/proteins by their commonly used names in publications? e.g. erg-1 …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data … of ‘baseline metadata’ across the files that are submitted by each scientific program,” he said. “If each kingdom … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … Like others, our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI … capabilities at EMSL, it depends on the capabilities. For speciation, protein-SIP, lipids, metabolites, it gets to the …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid event, with guests joining onsite at the Integrative … the exciting progress in gene editing made possible by CRISPR-Cas9; the Weizmann Institute of Science’s Assaf …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … discovery and maximize the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … Brassicales Genome Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on … sequences to improve breeding by genetic improvements. Apomixis is asexual reproduction through seeds, and  Peggy …
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