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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … in the United States, and is working to address some of the most pressing challenges of our time. For more information, …
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Evolution and comparative genomics of the most common Trichoderma species
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A phylogenetically novel cyanobacterium most closely related to Gloeobacter
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … innovative way to rapidly capture the binding location for most transcription factors in a species,” O’Malley said. …
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Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly*
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate … Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management … Actinobacteria, Acidobacteria, and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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The Orange Carotenoid Protein: a blue-green light photoactive protein
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … acronym, SOD. Of the dozens of Phytophthora species, the most globally-recognizable relative of SOD is P. infestans , … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … she stumbled upon an interesting observation in Chlamy. Most plants require the nutrient copper for photosynthesis; … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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