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iPHoP: A Matchmaker for Phages and their Hosts
… use a variety of approaches to match a virus with a potential host. This can result in different predictions. … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… among the major high-yield C4 crops, as are the candidate biofuel feedstocks Miscanthus and switchgrass.  Innumerable … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi …
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Mapping the Earth’s Hidden Fungal Kingdom
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … citizen scientists and the fungal scientific community as "potential routes to improve representation and understanding … which hold great economic value"— from pharmaceuticals to biofuels to agricultural applications. In conclusion, …
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Gene Expression: From On-Off Switch to Dial
… pathways for making high-value bioproducts including biofuels. In addition, the team says that this experiment … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in yeast ( Saccharomyces cerevisiae) to assess the potential of intermediate gene expression on two …
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Leptothrix ochracea genomes reveal potential for mixotrophic growth on Fe(II) and organic carbon
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New Research Sheds Light on Diversity in the Deep Sea
… living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents … development of new biotechnologies around clean energy,  biofuels and bioproducts.  Summary Hydrothermal vents are … Scientists with the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by … project, assessing how northern peatland ecosystems respond to increases in temperature and elevated concentrations … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… interacts with cell signaling networks that control many basic cellular functions. It plays an important role in … may eventually lead to ways to improve cellulose-based biofuel synthesis. Additionally, it opens the door to … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the process can result in other end products including biofuels and other bioproducts. Summary Researchers at the … roughly 300 combinations of metabolites. To demonstrate the potential utility of the browser, the team used  …
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