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A Sorghum Pangenome Opens More Doors to Discovery
… holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to bolstering sorghum fields, understanding this plant … More than a discovery in itself, this pangenome is a tool. It shows genetic variation across sorghum varieties …
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Analyze Data
… to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global … efforts to integrate data in support of new research questions that span domains. We also work with our partners to … July 22–July 24 for computing upgrades . We regret any inconvenience. …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic … and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  called …
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New and Improved: Eucalyptus Reference is Now Accessible
… assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference … having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly … the bioeconomy. Summary In the past decade, many breeding tools for eucalyptus have relied on the E. grandis reference …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … as a surgeon’s knowledge, and of gene editing as a new tool. In order to know exactly where to use your incredibly precise tool, you have to know where to use it, which exact base or …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … Institute for Agriculture, Food and Environment (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  Successful applications will focus … from a researcher, briefly describing the project motivation, experimental design, capabilities to be used and DOE …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. … Am fine. I live in a pandemic so I’m no different than anyone else.  DAN: Yeah. I mean fine in pandemic adjusted terms right?  MARCY: Yes–  ALISON: Yeah.  MARCY: Exactly.  DAN: I’ve always mentally had …
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was … global chocolate brands couldn’t exist without cocoa.  But today the plant is under threat due to climate change and … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Examples: Successful LOIs & Submissions
… Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for … not all guides are effective. To ensure the gene editing tool will make the right cut, researchers created a set of …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … from the warm, well-lit surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m … also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes …
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