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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are … our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still persists to …
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … I really can’t recommend it enough to this audience. The hardcover version is out now in stores and online, and there’s … find me. And really it was my third grade science fair project where I first looked into a microscope and just fell …
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Special Initiatives & Programs
… and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER Funding … Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … the original genomes. These metagenome-assembled genomes (MAGs) that came from shotgun sequencing are tricky because … in microbiome studies, these scientists (now at Stanford University) collaborated with the JGI. Working together, …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … adapted to stress and host specificity, particularly regarding the effects of climate change. Summary A team led by …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to … from the JGI and EMSL in one proposed research project. In the same proposal, researchers can also request … JGI : For general questions, contact  Christa Pennacchio , Project Management Office. For questions about the …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … team led by graduate student Fantin Mesny in Stéphane Hacquard’s group at the Max Planck Institute for Plant Breeding … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San … Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. Stop by and chat with … science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a … production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE … at the JGI as part of a 2014 Community Science Program project. The results revealed that at each of eight genes, …
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JGI Workshops at PAG
… The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider … current and ongoing developments at the JGI and KBase toward integrative biology and hear from researchers who are … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of host-virus …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral alignment, molecular … Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical Engineering …
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