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Partnerships: Adopt-A-Genome
… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, … provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … in correctly predicting plant pathogens (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) …
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
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Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes
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The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape
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Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii
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Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
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Natural Prodcast Episode 4: Nancy Keller
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … know, in bacterial investigations. You’ve spent your whole career as far as I’m aware working on specifically fungal … so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Natural Prodcast Episode 5: Brad Moore
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps … in his science. And he was working with some really cool projects at that time. So I was pretty stoked to be able to … And perhaps using biocatalysts we can do it in a cleaner, greener way. That’s one of our motivations, as well. Alison: …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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