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… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key … of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. …

… using these together along with all of our computational tools to really build out much more of an integrative … try to tackle these grand challenges. And then getting the tools that we develop into the hands of the broader … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …

… has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … the rapid injection of mutations in a particular gene might boost an organism’s fitness. Moreover, the discovery of more … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In …

… begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to … advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, depending on the specific product types covered in the …

… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free tool … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …

JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … viral genomics resources such as analytical tools and data repositories to two projects funded through the …

… worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …

… ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …

… of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … others: indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication …

… — creating many different ways of processing nitrogen. To boost crops more efficiently in the future, the evolutionary … of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized … this team built a phylogenetic tree using bioinformatic software called FastTree and identified 62 distinct AT …