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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane … avenues for using bacteria to produce ethylene and more.  Microbes excel at recycling the abundant miscellanea of … isolate it. The JGI provided a range of constructs based on sequences for MAR enzymes from different organisms to …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on … predictive models on how climate change may impact marine microbes and by extension, the ocean’s capacity to act as a … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … on the rhizosphere and interactions between the trees, microbes and soil chemistry offers insights into how these … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a … to learn more about the program's areas of focus, major initiatives and more.  …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders and … high-quality reference genomes. By cataloguing a genome sequence for a line of sorghum, reference genomes have …
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Party in the Rhizosphere
… There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds that plants secrete through their …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly … Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … was supported by the Bioenergy Technology Office (BETO) within the Department of Energy’s Office of Energy Efficiency …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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