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Kjiersten Fagnan
… Selected Publications …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … team reported the first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater …
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Georg Rath
… High Field MRI Centre in Vienna, where he first stumbled from software development into building productive … the Cluster Advisory Group composed of representatives from JGI’s science and production sequencing programs. …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… under award no. DE-SC0023027 (to SSM and JLM) with support from the Gordon and Betty Moore Foundation (to SSM) for the …
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Back in the Lab: the 2023 Summer Intern Experience
… experience in several years for students and researchers alike at the JGI. With the past few years upended by the … work, but the opportunity to collaborate with and learn from fellow researchers onsite as well. …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI … two interns returned to re-engage with their mentors from the previous year and continue working on their … Cataloging Lineage Specific Conserved Genes in Giant Viruses …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program … Arroyo lauded the partnership. Sindi also shared a message from Betsy Dumont , Dean of the UC Merced School of Natural … Huerta (2015 undergraduate intern): Just graduated from UC Merced and starting the Helena O. Mishoe …
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The More the Merrier: Making the Case for Plant Pan-genomes
… base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from additional parents or duplication, also known as … team studied  Brachypodium hybridum , a polyploid resulting from the combination of the genomes from the diploids  B. …
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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … of four  Zygnematophyceae algae, which were isolated from diverse freshwater environments. Arising in tandem from … had a genetic toolkit for multicellular growth with plant-like cell walls and environmental response.  These results …
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Genome evolution in the allotetraploid frog Xenopus laevis
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The Genome of the Western Clawed Frog Xenopus tropicalis
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JGI@25: Fueling Investigation into Methane-Making Microbes
… one-third of human-created methane emissions actually come from livestock — specifically, from the methane-making microbes within their rumen. There … rumen microbe genomes. The project relied upon resources from laboratories around the world, encompassing 54 …
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