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Progress Reports: 2002–2020
… to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… first paper that describes sorghum’s response to drought, from a large-scale field experiment to uncover the … the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in … a control condition, with water being applied weekly throughout the duration of the experiment, equal to the amount of …
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The fungus that made itself at home
… habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights on … to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo … the other brown rot fungi. Additionally, S. himantioides outcompeted all the brown rots it was paired with, …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… While summer interns at the JGI from multiple programs had their own goals to achieve, they …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, researchers … Horonobe Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  … CRISPR-Cas systems to recognize and remove invaders’ DNA from their own genomes. One of these systems, the …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… soil carbon. The process to harvest energy-generating peat from these boggy wetlands produces an estimated 5% of annual … Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, then tested for heat and pH stress by …
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Building Sphagnum Genomic Resources
… matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … can also act as a protective layer insulating permafrost from the warming regional temperatures. For this reason, the … prevent methane production by routing the carbon away from methanogens. In The ISME Journal, a team led by …
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Computationally Classifying Fungal Lifestyles
… an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could …
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A Community Resource for Secondary Metabolite Researchers
… it is the largest repository of BGC sequence data from over 1.3 million publicly available bacterial and … gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( … Dan Udwary talks about the Secondary Metabolism Collaboratory  …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and …
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Back in the Lab: the 2023 Summer Intern Experience
… work, but the opportunity to collaborate with and learn from fellow researchers onsite as well. …
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Soil virus offers insight into maintaining microorganisms
… of genetic diversity and capable of transferring genes from one host microbe to another, which can have a … carbon cycling .  The team was led by researchers from the Pacific Northwest National Laboratory (PNNL), with additional support from the SLAC National Accelerator Laboratory. After PNNL …
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