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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI … The Chief Informatics Officer provides advice and strategic direction for …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … learning models that predict biological traits from DNA sequences. The study also confirmed that mitochondrial and …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … The study was funded by Natural Sciences and Engineering Research Council of Canada … P. psychrophila on PhycoCosm … Datasets …
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