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Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricumtype E strains
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics … Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … leader in data, software, compute, and AI for large-scale genomics and lab informatics. Prior to joining JGI in late …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can … unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and genetic basis of …
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Accelerating Metagenomics Discoveries with Deep Learning
… from whole samples rather than single cells or isolated strains, is easy to generate, but difficult to assemble and … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks …
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Plant genotype and rhizobia strain combinations strongly influence the transcriptome under heavy metal stress conditions in Medicago truncatula
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her primary …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Ben Bowen
… and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth
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