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Olpidium, The Key to the Origin of Terrestrial Fungi
… Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and … fungi predate the oldest known fossil record of land plants and evolved in early microbial biocrust environments. …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … at Lawrence Berkeley National Laboratory, have collaborated with global researchers on projects related to understanding …
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The Power of One, Amplified
… cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … between the analyzed community members. The Impact Though microbes help regulate the planet’s nutrient cycles and are … of tens of thousands of previously unknown and uncultivated microbes through metagenomics. Such techniques take …
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Waiting to Respire
… postdoctoral fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed … MAGs later dubbed Saganbacteria. At the same time, working with researchers from the Bigelow Laboratory for Ocean … The research teams opted to collaborate on a single study, with Matheus Carnevali and Schulz sharing co-first …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and … that I’ve been in my PhD program, I’ve been really focused with academia. And so this was the first time I was … my interest in bioformatics, so that’s what I’m gonna take with me to the future.  Shari Larsen : I didn’t grow up with …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… next-generation feedstocks through CRISPR-edited poplars with optimized lignin, engineering heat-resilient algae for … approaches to unravel functional capabilities of plants, microbes and microbial communities, and understanding of …
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Gene Expression: From On-Off Switch to Dial
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… program and current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution … project, Visel explained. She continued working virtually with her JGI mentors for nearly three years after her … from this project may also have a practical relevance with helping to synthesize codon-optimized fungal genes for …
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Danielle Goudeau
… flow cytometry protocols for targeted recovery of specific microbes. …
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New Research Sheds Light on Diversity in the Deep Sea
… seeps through cracks in the Earth’s crust and reacts with very hot rocks below, becoming an extremely hot, … and functioning of a given microbial community. Scientists with the U.S. Department of Energy Joint Genome Institute, a … metabolisms represented in hydrothermal vent communities, with possible applications in biogeochemical engineering,  …
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iPHoP: A Matchmaker for Phages and their Hosts
… to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of … microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon …
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Trent Northen
… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development …
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