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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil … a template — integrative analysis of multiple omics data from various environments — that JGI users can leverage to … the increased salinity caused the cell to consume phosphate from its environment more quickly than usual. In addition, …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department … biology tools that can help produce value-added products from these systems. He’s worked with the JGI on various CSP … as a UEC member is increasing user program participation from researchers at non-R1 institutions, now defined as …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the … is led by a team of highly experienced investigators from institutions including the University of Maryland and … UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse metagenomics samples. …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The … began in 2014, pairs undergraduate and graduate students from UC Merced with at least one JGI mentor. Together, they …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple … Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy Research Scientific … diversity/inclusion by the annual  HPCwire Readers’ and Editors’ Choice Awards . NERSC, JGI, ESnet are U.S. Department …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … of Huntsville, Alabama and is known for her contributions to rapidly growing the economy of Rocket City. Grimwood is … sequence of the complex switchgrass genome , using samples from common gardens growing across the country. The national …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. … Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and functions, but the DNA … Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is …
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Access to Rock Star Scientists
… of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial … “The summer internship has further confirmed by desire to pursue a STEM career, specifically in a government lab. … Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for … fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and … for controlling the lipid content of biofuels sourced from algae. The collaborative approach highlights how the …
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JGI at the AGU Fall Meeting
… unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating … Successful Proposals December 9  4:15pm PT (online) Town Hall on how the Facilities Integrating Collaborations … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST Convention …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… of environments, including plants, soil, and the gut. To better understand the dynamics of this molecule, … synthesis. Additionally, it opens the door to measuring real-time changes in cyclic di-GMP via live cell imaging. Summary From digestive tracts to plant surfaces and soil, bacteria …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome … user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, Greg Bonito of … Kristen DeAngelis will serve as the Past Chair.  Aside from the duties described above, the UEC also contributes to …
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