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Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the …
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JGI Workshops at PAG
… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider … of plant systems. We will describe how to apply for a project with the JGI Community Science Program and how you …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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A Powerful Technique to Study Microbes, Now Easier
… Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive … at Cornell University and scientists at the Joint Genome Institute, a DOE Office of Science User Facility was … genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, 2017 issue of …
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Toward More Efficient Artificial Photosynthesis
… Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts … Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … enzyme variants. ECR enzymes are capable of fixing CO2 many times faster than RuBisCo, the most common CO-2 fixing …
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Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … biomass processing. This year’s portfolio also includes a project led by the National Ecological Observatory Network … metagenomics data. Taking the JGI’s call for large-scale projects at their word, the research consortium aims to …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature Microbiology an important addition to the synthetic biologist’s toolkit: a technique for  c … the amount of DNA that can be inserted at a time. In a  project detailed in  ACS Synthetic Biology , Yoshikuni and …
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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes ▿
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