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… — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and … has opened vast windows into specific activities catalyzed by microbial communities. By pairing RNA or DNA sequencing … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …

… perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that … Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii … complete) and P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections from across the …

… of California, Berkeley aims to redesign and engineer algae by identifying the algal regulators that could boost lipid … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned … severity wildfire.  Eight of the approved proposals are led by researchers, including Nelson and Roth, who have not been …

… as a biofuel. To this end, a team of researchers led by Jeremy Schmutz of the JGI and the HudsonAlpha Institute … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the …

… Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson … et al (2017) A parts list for fungal cellulosomes revealed by comparative genomics.  Nature Microbio 2:17087. Mondo et … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …

… foundation for metabolic engineering in oleaginous algae. By creating a telomere-to-telomere nuclear genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a major challenge in algal engineering by allowing for dramatically more precise gene-targeting. …

… Sequence-based studies — from metagenomics to single-cell … of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference … This work was conducted by the US Department of Energy Joint Genome Institute, a DOE …

… to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao Chen, Jay Chen, Maureen Coleman and Hugh Cross; … This year’s portfolio also includes a project led by the National Ecological Observatory Network (NEON) in … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP …

… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome … with a view to developing a deeper understanding of sequence-based gene function. … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a … tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. …