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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial products.    The Science Scientists have fully decoded the genome of an oil-producing … under award no. DE-SC0023027 (to SSM and JLM) with support from the Gordon and Betty Moore Foundation (to SSM) for the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the … microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office … is led by a team of highly experienced investigators from institutions including the University of Maryland and …
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A Social Science Experience
… 2017 Summer Interns Share Highlights of their time at the JGI …
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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining and …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also … gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial …
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The Fungi That Survive In Antarctica
… fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh … Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future … (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government organizations for …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support … samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced mass spectrometry …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Expanding Virophage Diversity
… maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, …
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