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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors … factors. While characterizing sigma factors is the most straightforward application of the technology, in principle, … the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. … that the process of moving 250 people and their equipment from 4 single-story buildings to a new 4-story building 20 …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… (Try it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have … had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the sample’s …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic elements ( Nature Biotechnology , 2024), and iPHoP , an integrated machine … is led by a team of highly experienced investigators from institutions including the University of Maryland and …
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JGI User Executive Committee Expands
… biology tools that can help produce value-added products from these systems. He’s worked with the JGI on various CSP … as a UEC member is increasing user program participation from researchers at non-R1 institutions, now defined as … and practices that affect users and their access to technical capabilities JGI offers, as well as proposal …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… began in 2014, pairs undergraduate and graduate students from UC Merced with at least one JGI mentor. Together, they …
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Introducing New Members of the JGI User Executive Committee
… other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s open application process … and practices that affect users and their access to technical capabilities JGI offers, as well as proposal …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm mayor of … sequence of the complex switchgrass genome , using samples from common gardens growing across the country. The national … to switchgrass through more targeted genome editing techniques. A 2020 Nature Biotechnology paper on the release …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… at Northwestern University, and researchers at the biotech company LanzaTech to develop a “cell-free” gene expression system. … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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Access to Rock Star Scientists
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Picking Up Threads of Cotton Genomics
… faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new cotton work, … the textile industry, and consumers will derive benefit from this high impact science for years to come,” said Don … or eight years, but sometimes 10 or 15 years, because the technology develops over time.” Researchers from the …
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