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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Dan Rokhsar
… genomics is targeted towards the development of improved biofuel feedstocks and understanding and ultimately … Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, UC …
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JGI@25: Strengthening Soybean
… rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s … of projects that point to the potential of seed oils as biofuel. After analyzing the original sequence, Gary Stacey …
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Matt Blow
… and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root … Phosphate from Phytate. Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for thousands of bacterial genes of …
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An Integrated Dataset to Understand Ecosystem Interaction
… their genetic diversity. They hold economic value as both biofuel feedstock and their role in carbon sequestration. … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared with previous studies in the same …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared with previous studies in the same …
Learn more
Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … applied to multiple research areas including agriculture, biofuels and bioproducts, and medicine. Wading through 30 … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… evolved could help inform engineering microorganisms for biofuel production and other sustainable applications. … that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of … processes might be harnessed for applications including biofuel production. … The work (proposal:  …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… — for potential use as biomass or in biomass conversion to biofuel. Summary Water temperatures and salinity determine … utilizing these organisms in sustainable practices, such as biofuel production and natural fertilizers. By understanding …
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The JGI announces 2024 awardees for our Community Science Program annual call
… and Environmental Research (BER) missions in: sustainable biofuel and bioproducts production, global carbon and …
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