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… includes engineering of non-model yeasts for production of biofuels and renewable chemicals, developing genome … clusters in bacteria, Cell Chemical Biology , 2022 … R&D100 Award finalist 2019 SIMB Young Investigator Award 2013 Sustainable Biofuels Awards, Green Shoots Award 2012 Jane Coffin Childs …

… in other algae that may be more viable for sustainable biofuel production. The JGI published a partial sequence of … specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The … Chromochloris zofingiensis , which has applications in both biofuel and pharmaceuticals. The team at Merchant’s lab also …

… a bit embarrassed that we recorded this conversation about 10 months ago. I was pretty green at the time and had some … the fungal farms from other fungus that want to take advantage of that resource. So in those type of situations, what … and so on. So I have the feeling that we are just at the stage in which synthetic biology could be making secondary …

… of Bordeaux Initiative of Excellence (IDEX Bordeaux; (ANR)-10-IDEX-03-02). T.E.M. and R.M. were supported by the …

… habitat restoration and as a feedstock for biomass-based biofuel production. As seen with many commonly cultivated … genetic variation available for selection to improve biofuel yield through a changing future. Switchgrass has … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …

Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature Plants …

… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … ecogenomics. For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS …

Goal FY 2025 Total 700.0     8,585     Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – … experimental capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new …

… pathways for making high-value bioproducts including biofuels. In addition, the team says that this experiment … gene expression on two energy-filled sugars used in biofuel production, glycerol and galactose. Although they … expression in metabolic pathways that could be used for biofuel optimization and other applications. … This work was …

… cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of …

… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). …

… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, …