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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … around the world. That said, we recognize that workforce in genomics, including JGI, is not representative of the … funded by the National Science Foundation (NSF) that supports underrepresented minorities in science, technology, …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through … Find more details on the instrumentation we use and our methodology for … Read more about our submission guidelines, what you can expect from your results as well as our …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes … who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or … works to keep throwing the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The … the ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with … Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … part of the tree  (see full answer on video) 4.  Q: Will it support custom columns in the future? For other things than … While are still working on finalizing the tree and related publication the tree is still in development and not …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular … Laboratory hosted a webinar to showcase how researchers can gain access to the Advanced Photon Source (APS) at … The FICUS call allows researchers to combine the power of genomics and molecular characterization from the JGI and …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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