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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … over 2,000 fungal genomes. The JGI sequenced, assembled and annotated these genomes in collaboration with dozens of …
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Frameshift detection in prokaryotic genomic sequences.
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Large-scale contamination of microbial isolate genomes by Illumina PhiX control
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … that the project had already received enthusiastic support from the JGI Director, Nigel Mouncey. Jonathan credits his … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the … Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the …
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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Bacterial Genome Annotation
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum …
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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