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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … tolerating the changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm …
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Microbial sensitivity to temperature and sulfate deposition modulates greenhouse gas emissions from peat soils
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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DAS Tool for Genome Reconstruction from Metagenomes
… and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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Large-scale contamination of microbial isolate genomes by Illumina PhiX control
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … technology in order to enhance the quality of single-cell genomes and directly link functional information with …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … work was partially supported by awards from US Department of Energy (DOE) Office of Science, Office of Biological and …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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Frameshift detection in prokaryotic genomic sequences.
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … shallow portions of the groundwater were nearly cleared of contamination. By 2020, the water was at contamination …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic valleys, these … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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