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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of … collapsed, while these issues are not commonly seen with reference isolates. “For secondary metabolite discovery in … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Reference genome sequence of the model plant Setaria
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … offers single-step genomic integration and prototyping of complex pathways. The team will be working with LanzaTech to …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … research. “What I have told our growers is, ‘Think of these reference genomes as a surgeon’s knowledge, and of gene …
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Scientific Advisory Committee
The Scientific Advisory Committee (SAC) is a board convened by the JGI … sequencing, new sequencing technologies, and related informatics; overview of the scientific programs at the JGI; … and Environmental Research (BER) program, set the final sequence allocation for this program. …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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