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Products
… Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene … transcriptome or de novo assembly), DGE, alignment files 91/126 Metabolomics Polar metabolite analysis Relative …
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A Collaboration to Improve Plant Genome Annotations Across Species
… targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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Toward More Efficient Artificial Photosynthesis
… Office of Science User Facility (contract no. DE-AC02-05CH11231) with T.J.E. as grantee. J.-C.B. acknowledges the … of Bordeaux Initiative of Excellence (IDEX Bordeaux; (ANR)-10-IDEX-03-02). T.E.M. and R.M. were supported by the …
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Danielle Goudeau
… cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows …
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Secondary Metabolites Program
… Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Examples: Successful LOIs & Submissions
… CSP Large Scale Proposal #1 … CSP Large-Scale LOI #1 … FICUS Example #1 …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With … it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic Science In this workshop, we …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome … of agronomically valuable loci. Nature Biotechnology 38:1203-1210. Chen, ZJ et al. 2020. Genomic diversifications of …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
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Webinar: MycoCosm Tutorial
… submit metadata and assembly at  https://gold.jgi.doe.gov 10.  Q: Is there any possibility to search for … and quantifications, and shipping. A: Absolutely! 12.  Q: Is it possible to use the Browse page tool to … track and may be included in GenBank submissions 16.  Q: Is there any information on the promoter of genes …
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Marine Microbe Contains Multitudes
… Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii … they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial … by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation grant …
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