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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on … combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …
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Examples: Successful LOIs & Submissions
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Leo Baumgart
… in flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, … embryo and root development." Plant Communications 6, no. 10 (2025). Kruse, Colin PS, Sara Calhoun, Bishoy Kamel, … Tsimring. "Microbial microfluidic biosensor." U.S. Patent 11,209,412, issued December 28, 2021. Baumgart, Leo, William …
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Doubling Down on Known Protein Families
… how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the … work. Other authors on the paper are Fotis Baltoumas, Sirui Liu, Oguz Selvitopi, Antonio Camargo Stephen Nayfach, Ariful …
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Data Ecosystem
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2024 Progress Report
… have already completed 37% of the two-year milestones, and 11% of the five-year milestones. …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI …
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Katherine Louie
… analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI … natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, …
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Mike Sneddon
… Liu, O., Akiva, E., Eyles, T. H., Galm, U., Ganesh, S., … library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published … Academy of Sciences of the United States of America 109(3), 805–810 (2012).  Sneddon, MW, Faeder, JR, and …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable mentions were recognized. The 5 UC Merced …
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JGI Portals
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department … of Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European … LEVEL-UP ANR-21-CE20-0010-01) to C.J., from ZhuJiang (2019ZT08N628) and the National Natural Science Foundation of China …
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