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New and Improved: Eucalyptus Reference is Now Accessible
… for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of … grandis reference genome that has been widely adopted. The new genome assembly resolves both haplotypes, meaning it … to develop molecular breeding tools has been critical. The new improved genome assembly generated through the JGI’s …
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Silver age of GOLD introduces new features
… scheme to better define the genomic information and ecosystems. These curated data are accessible on JGI data … have spurred its growth and the continuing development of new components and capabilities. The most recent improvements include new features like a public API and ecosystem landing page, …
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Identifying candidate structured RNAs in CRISPR operons.
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be … And so we've been really interested in trying to find new hormones that can activate receptors and clusters that … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… recycling the abundant miscellanea of their surroundings. Case in point: for us, the smell of the ocean simply signals … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Rapid cell-free characterization of multi-subunit CRISPR effectors and transposons
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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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IMG/M: a data management and analysis system for metagenomes
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …
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What Happens Underground Influences Global Nutrient Cycles
… by researchers. A missing gene from this mutant library leads to photosynthetic defects, offering insights into how …  under PNNL’s Soil Microbiome SFA, which aims for a systems-level understanding of the soil microbiome and its … processes across temporal and spatial scales. EMSL leads the scientific community toward a predictive …
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DAS Tool for Genome Reconstruction from Metagenomes
… changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of … and interactions. Supported by JGI’s ETOP, this new tool will now be available for JGI users interested in …
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