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… and resources.     Director's Perspective Over the last year, the U.S. Department of Energy Joint Genome Institute … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized … with large-scale advanced genomic capabilities. This year we brought online the latest short-read technology, the …

… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and … from host-associated and environmental samples to identify and characterize genomic information from uncultivated … She stepped into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome …

… shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: … JGI intern for a second time since participating in summer 2017 ( read more here on her previous experience) has …

… We are still in – not an early stage. I think we can identify most secondary metabolism pathways now, but there’s still … it’s been a little bit difficult sometimes to identify secondary metabolism, just because it is similar to … And so we’ve really only come into good science for identifying secondary metabolism as we’ve sequenced more and more …

… other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome Data Science … LB et al. Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science. 2018 Nov 16;362(6416):839-842. doi: … Cas9 with increased lifetime in human plasma. Nat Commun. 2017 Nov 10;8(1):1424. doi: 10.1038/s41467-017-01408-4. …

… JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  … Data Restriction Policy requires that users know about the FY Funding Year, and the publication status in addition to the …

… genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces … restoration. They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on …

… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six … new features like a public API and ecosystem landing page, as well as the growth of different entities,  further …

… photosynthesize and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC Kearney Agricultural Research and Extension Center. 2017: The JGI and collaborators sequence and annotate the …

… funding by the Alfred P. Sloan foundation (grant number G-2017-9955), the Ministry of Culture and Science of North … within the Census of Deep Life Sequencing call 2018, phase 14 project “Development of novel archaeal viruses and the …

… Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the California-Baja … “Being a JGI-UC Merced Intern during the summer of my first year as a Ph.D. student significantly, and positively, … defends her dissertation in May. Since its inception in 2014, more than 20 UC Merced students have contributed to the …

… not covered in these tutorials 6.  Q: On the genome synteny page, would it be possible to add a feature to look for synteny of the target genome with itself, to identify regions that might be duplicated? A: Yes, we do routinely … usually in the dropdown of available targets on the synteny page. 7.  Q: What is the success rate for CSP? What makes a …