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Doubling Down on Known Protein Families
… approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark … on Functional ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are … study also references data from the JGI’s  Genomes from Earth’s Microbiome , or GEM catalog). Then they removed any …
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Mapping the Earth’s Hidden Fungal Kingdom
… the deepest ocean floors to Antarctic valleys, these organisms have diversified into an estimated 2–6 million species … with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have … reveals just how much we still have to discover about Earth's fungal kingdom. The manuscript reviews about 200 …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more … also elaborated on the following topics. Q(uestion): What is the Data Portal’s scope? A(nswer): The JGI Data Portal …
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DAS Tool for Genome Reconstruction from Metagenomes
… and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … have developed and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to …
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our … Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to … the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, … drive innovations that could advance our understanding of Earth’s ecosystems. …
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Clades of huge phages from across Earth’s ecosystems
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a single snowflake on a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … as best we could, we tried to describe the protein domains every virus carries, and who is their likely host. We’ve …
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10 From JGI on the 2019 Highly Cited Researchers List
… & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined … Woyke , Biology & Biochemistry category Some highlights from projects each of these researchers were involved in …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … than two hectares of land — common bean is often a food at every meal.” McClean cites the common bean’s nutritional … “Technology was actually quite a bit different than it is today,” Schmutz said. “…It was incredibly expensive and …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for … produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing … This work was supported by laboratory-directed research and …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the …
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