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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … 5, 16, and 19. Following the completion of the human genome project in 2003, he developed sequencing, assembly, and … eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Natural Prodcast Episode 7: Ben Shen
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and … well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly …
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Natural Prodcast Episode 1: The Primer, Part 1
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … My name is Dan Udwary. I – as well as my co-host, Alison Takemura, whose voice you’ll hear in a minute – we work … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem
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Igor Grigoriev
Institute, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the …
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The Biota Project: A Case Study of a Multimedia, Grassroots Approach to Scientific Communication for Engaging Diverse Audiences.
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. Department of Energy Joint …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … and selection processes, making it difficult to propose projects that truly integrated the capabilities of more than …
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