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SPRUCE-ing Up Science
… now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in Tennessee — … example, despite taking up only about 3% of the planet’s landmass, peat moss and their subsurface bogs hold over 30% … was just beginning to develop and expand into the world of evolutionary biology. And around that time, a collaborative …
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CalTeach
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Yasuo Yoshikuni
… for non-model organisms, modulating microbe-microbe and plant-microbe interactions in various environments to … metabolite biosynthetic gene clusters in bacteria, Cell Chemical Biology , 2022 …
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10 From JGI on the 2019 Highly Cited Researchers List
… Category Fungal and Algal Program head Igor Grigoriev , Plant & Animal Science category Plant Program Library Construction Group Lead Jane Grimwood … Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category Plant Program head Jeremy …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing bio-based plant nutrition products that target soil enrichment, is …
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Nikos Kyrpides
… global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. … map of urban microbiomes and antimicrobial resistance. Cell . 8674:00585-7. Nayfach S et al. 2021. CheckV assesses … of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | …
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Matt Blow
… Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ … et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of Prokaryotes. PLoS Genet 122:e1005854. Nord Et …
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Improving the Cacao Genome and Phytozome
… brands couldn’t exist without cocoa.  But today the plant is under threat due to climate change and devastating … with others to develop healthier and more productive cacao plants and ensure there will be cocoa for chocolate tomorrow … Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha Institute for Biotechnology . …
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An Automated Tool for Assessing Virus Data Quality
… these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and … (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the virus-host boundary … methods, it was possible to distinguish between metabolic genes found in the viral genome versus those from the host …
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Informatics Advisory Committee
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A User-Centered Approach to Accessing JGI Data
… launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for … limited to accessing data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made …
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Mining Metagenomes for Cas Proteins
… (that is, repair gene mutations, and either delete or add genes in a precise fashion) has applications across many … typical Cas12d proteins and were also found next to cas1 genes. Further analysis led to the identification of a new … and Nanohaloarchaea. This work represents an excellent showcase of the unique capabilities provided from …
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