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Directed Evolution of Flavin-Dependent Halogenases for Site- and Atroposelective Halogenation of 3‑Aryl-4(3H)‑Quinazolinones via Kinetic or Dynamic Kinetic Resolution
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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JGI Scientists Pen Genome Watch Articles
… latest article, published January 27, is about engineering plants and their microbiomes for more sustainable … Igor Grigoriev took readers on a quick romp through the  evolution and domestication of yeast , a model eukaryote. …
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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Partnerships: Adopt-A-Genome
… DSM 14916T, isolated from a children’s care center in Finland. Microbiol Resour Announc 0:e00891-25. … DSM 15742T Isolated from a patient’s blood in Cleveland, Ohio. Microbiol Resour Announc. 0:e01296-24. …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… And since microbial genomes are simpler to model than large plant or animal genomes, they are a good starting point to … Think of verbs and nouns as the nucleotide bases of DNA; genes analogous to paragraphs;  genomes equate to complete … of raw environmental data. Trained on numerous versions of genes and enzymes, GenomeOcean can generate diverse types of …
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The JGI announces 2024 awardees for our Community Science Program annual call
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Mapping Heat Resistance in Yeasts
… a new genetic mapping strategy called RH-Seq can identify genes that promote heat resistance in the brewer’s/baker’s … mate to produce progeny. The ability to pinpoint which genes underlie unique traits in far-flung species would … need to be able to assign functions to unknown genes and improve functional annotation to harness the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… nitrogen, but the viruses that infect Altiarchaea cause the cells to burst. This action triggers subsurface carbon … indicate repelled attempts to infect and lyse the microbial cells. This demonstration of the virus-host arms race in … virus under a microscope. The viruses were adsorbed by the cells, which then burst, spreading the virions out and …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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