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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong … Opportunities Center coordinator Jorge Arroyo lauded the partnership. Sindi also shared a message from Betsy Dumont , … Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the …
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Fungal Friends or Foes in Plant Roots
… compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated … determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … but not all plants and fungi can form such symbiotic partnerships. To learn more about these other plant-fungal …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … to Ray and most of the rest of the 200-plus Zoom participants. While the virtual mic shifted to Ray for his …
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Ben Bowen
… computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. … H., Garcia-Pichel, F., & others (2015). Exometabolite niche partitioning among sympatric soil bacteria. Nature … Google Scholar. … Education … Awards and Honors … Selected Publications …
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Massie S. Ballon
Massie S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and social … in science communication from UC Santa Cruz. She is one of the Biosciences Area representatives to Berkeley Lab’s …
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JGI-UC Merced Interns Share Their 2021 Experiences
… research projects, hone science presentation skills, and participate in professional development enrichment … activities. For some students in the 2021 cohort, this was their first internship experience, while others … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our …   The Human Genome Project began in 1990 when the U.S. Department of Energy (DOE) partnered with the National … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Introducing New Members of the JGI User Executive Committee
JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … the full roster of members. Each of the researchers had particular reasons for wanting to serve on the UEC. … who studies sediment-dwelling archaea, expressed his interest in giving a voice to JGI users who feel that …
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A Collaboration to Improve Plant Genome Annotations Across Species
… capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids …
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The More the Merrier: Making the Case for Plant Pan-genomes
… parents or duplication, also known as “polyploidy,” is common among flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … at Spain’s Universidad de Zaragoza and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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Jeremy Schmutz
There he constructed the pipelines for directed finishing and co-led the team that finished the DOE human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock … A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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