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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … descriptions from nearest phylogenetic neighbors. Our pipeline allowed us to add expression-derived additional …
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The JGI announces 2024 awardees for our Community Science Program annual call
From left to right: [above] Olivia Ahern, Adriana Corales, Hugh Cross, Megan … JGI is excited to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science … of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant discovery and applications. This … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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David Goodstein
With a background in experimental and computational surface … and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock … A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford … Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led the team that … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s …
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