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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types …
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Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater
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Plant–microbiome interactions: from community assembly to plant health
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing … , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects … DOE mission relevance, proposed data usage by the applicant/community, and track record of the applicant. For accepted … by the due date printed below. Proposals will be invited from those applicants whose LOI is approved. The letter of …
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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … further drive a strong bioeconomy. Summary Through the Community Science Program of the U.S. Department of Energy … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which …
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A Collaboration to Improve Plant Genome Annotations Across Species
… – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … two species, one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a … are genes out there that affect this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is … back to identify candidate genes.”  Through the JGI’s Community Science Program , sequences of several hundred …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … Processes and Ecology and the Daniel K. Inouye Center for Microbial Oceanography: Research and Education. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high quality reference genome sequences could help researchers better understand related …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the … the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and …
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