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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … to learn more, then I highly recommend David Hopwood’s book called  “Streptomyces in Nature and Medicine.” It’s … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, …
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What Happens Underground Influences Global Nutrient Cycles
… Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. Submitted proposals addressed one of the following … Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place …
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DOE Metrics
…     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Scaling Up Existing Skill Sets
… I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing skill set to a new scale, which presented a host of interesting and ultimately … Year: 3rd year undergraduate student Mentor: Zhong Wang, Genome Analysis What effect has your summer internship with …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … could be a molecule that’s embedded in their – what do you call that – I want to say like lipid bilayer, you know, in … has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So …
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Genotype–phenotype correlations within the Geodermatophilaceae
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … on sustaining our record of excellence and respect, and for principles of integrity, safety and reliability. As … on merit of issues; Act honestly, transparently, and ethically; Act on behalf of the JGI user community rather than …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… to the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA Synthesis Science … Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library … these capabilities in other calls such as the  annual large-scale CSP call or through the  “Facilities Integrating …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … well, two things. My PhD work was with a fungal pathogen called Cochliobulis heterostrophis . This is a very well … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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