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… increments.  At the JGI, a typical proposal is active for 3 years with the possibility for extension. Fungal genomes, for instance, can take up to a year or more to complete. Having that optional 12-month wait … APS, BioSANS typically has an acceptance rate of 12 to 15%, mainly due to resource limitations with our partner …

… and resources.     Director's Perspective Over the last year, the U.S. Department of Energy Joint Genome Institute … A record number of primary users — 2,456 — had active proposals with us, along with more than … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized …

… the interface of simple and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s … (MIUViG). Nature Biotechnology 37, 29–37. Schulz et al. (2017) Towards a balanced view of the bacterial tree of life. … Senior Editor, ISME Journal LBNL LDRD (Soil Protists) FY2022 LBNL LDRD (Viral Variant Surveillance) FY2021 …

… statistics across genomes (see video on comparative tools) 5.  Q: Is there any programmatic access to the portal? Or … A: Absolutely! 12.  Q: Is it possible to use the Browse page tool to compare your own data with the JGI database? A: … non-filtered? A: Filtering is an automated attempt to identify the best representative gene model per locus, based on …

… also served as JGI Interim Director from March 2016 – March 2017.   … Xu J, Northen T, Visel A , Bristow J, Niyogi KK, Wei CL (2015).  Lineage-specific chromatin signatures reveal a … of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, Brancati …

… from host-associated and environmental samples to identify and characterize genomic information from uncultivated … She stepped into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome … genome (MIUVIG). Nature Biotechnol. 37:29. Bowers et al. 2017. Minimum information about a single amplified genome …

… shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: … JGI intern for a second time since participating in summer 2017 ( read more here on her previous experience) has …

… We are still in – not an early stage. I think we can identify most secondary metabolism pathways now, but there’s still … it’s been a little bit difficult sometimes to identify secondary metabolism, just because it is similar to … from 1940 to 2000. As you can see, from the 1940s, into the 50s into the 60s, there was a huge growth – a huge explosion …

… JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  … Data Restriction Policy requires that users know about the FY Funding Year, and the publication status in addition to the …

… genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces … restoration. They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on …

… Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the California-Baja … “Being a JGI-UC Merced Intern during the summer of my first year as a Ph.D. student significantly, and positively, … Merced graduate students who participated in the Summer 2015 research experience at the JGI as part of an education …

… photosynthesize and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple … team studied sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC Kearney Agricultural Research and Extension Center. 2017: The JGI and collaborators sequence and annotate the …