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Integrating Experimentation with Data
… The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to … Click to view a downloadable copy of the sponsor prospectus … Keynote Speakers Jim Collins Massachusetts Institute of Technology Kristala Prather Massachusetts Institute of …
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VEGA Symposium
… campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … be held on Nov. 18 in the Tilden room and open-air patio of the same building.  The symposium will include a mix of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … anaerobic methanotrophic and short-chain alkane-oxidizing archaea. They used IMG because the database … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish … infections and are important for virus-host interactions. Analysis of strain variation showed that haloarchaea … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … the bridge to help scientists and researchers achieve their analysis goals. Offering this tool establishes the JGI as a … involves taking a single cell and isolating it for analysis. Once it’s alone, the cell breaks apart and its DNA …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data via … to learn all steps including both wet lab and computational analysis. They also learned how to log on to Dori – a …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … crops such as sugarcane and sorghum. The M. sinensis genome analysis explains the hybrid origin of giant miscanthus ( M. …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … A record number of primary users — 2,456 — had active proposals with us, … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … varieties that have high productivity across a range of environments is becoming increasingly important for food, … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy …
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Webinar: Introducing the BioSANS capability
… on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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