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Charting Progress toward Professional Goals
… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the … people in my group and my mentor looked over and was like, “why are you explaining phylogeny to people who have been … this. Although my interest was always laid in sort of, in analysis. So sort of more computational generally. But yeah, …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … This work was enabled by developments in sequencing and analysis methods within the JGI’s plant program. By … JGI provides more insight into plant variation for future analysis and discovery. “We're building the data sets that …
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Danielle Goudeau
… collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, … novel flow cytometry protocols for targeted recovery of specific microbes. …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … than even carbon dioxide. The EPA attributes one-fifth of all methane emissions to livestock and roughly one-third … rumen microbes are awesome and this is just another example why.” …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … came up with this new method, Session mentioned that the analysis for determining the evolutionary history of … small possibility that something could be missing from the analysis (due to extinction or you didn’t sample it). But …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  … — including the eelgrass genome assembly that enabled analysis of the whole genome duplication event — …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play … expanded genes for proteins requiring zinc. Co-expression analysis as well as laboratory culture experiments showed …
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