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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a Superfund … was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that require cleanup and long-term …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … that produce them. The Impact Secondary metabolites are microbial compounds produced in response to hardship or … combining it with CRISPR.  By employing CRAGE, researchers are no longer limited to using model host microbes; …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … Among the long-term aims for bioenergy feedstock crops are increasing their yields and improving their abilities to adapt to extreme environments such as poor soils and drought. The reference genome for M. sinensis, and …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in environmental genomics by … authors, “’Once you find a paper that you really like or are passionate about, take that topic and run with it — …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … their environments could be applied to multiple research areas including agriculture, biofuels and bioproducts, and … genomes, and nearly 44,000 metagenomes. All of the data are publicly available in the National Center for …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… In this short video, UC Merced undergraduate and graduate students share how their summer internship experiences have influenced their careers in science. Hear more about what they learned from …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … they asked – and answered – in the study that recently appeared in the Proceedings of the National Academy of Sciences … ploidy levels, called cytotypes, across the species. These are primarily tetraploids (4X or four copies of the genome) …
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Building Wet and Dry Lab Skills
… the second year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and … to the weather or practicing soccer with local Bay Area soccer teams – Zyiah plays on the AAMU women’s team and … made me feel comfortable here. Zyiah Mikes : You guys are both intelligent and confident in your work, and that's …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Arising in tandem from the same ancestor, these algae are considered sisters to land plants, based on shared genetic traits and evolutionary lineage. They provide a …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the … Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, University of California, San Diego … I. Greenblum, Abraham Morales-Cruz, Peng Wang, Yu Zhang, Lin Yang, Cindy Chen et al. "Recruitment, rewiring and deep …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … of user science.  Capabilities offered by the platform are a result of Dr. Louie’s establishment of a strong core … micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data (MAGI) …
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