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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … the development of the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
To understand how organisms adapt to extreme environments, Marike Palmer and Brian Hedlund study …
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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the …
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JGI Hosts GPU Hackathon in May
… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … simulation codes. “JGI is one of the largest producers of environmental genomics data and has a strong reputation in …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial … it in the deep ocean. With genomic samples collected before, during and after The Blob, researchers developed a … the water samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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Kjiersten Fagnan
Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Simon Roux
… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … global RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Ben Bowen
… projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and … & Metabolic Biology … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab … Google Scholar. … Education … Awards and Honors … Selected Publications …
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2025 NeLLi Symposium
Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a … Immediately following the NeLLi Symposium, join us for a 1.5-day jamboree on November 6-7 focused on improving … Olga Zhaxybayeva Dartmouth University … Metagenomic and single-cell sequence data have provided a means to access …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah … the next generation workforce.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Party in the Rhizosphere
… are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of …
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