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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy … on two types of naturally occurring switchgrass, those with 4 copies of the genome (4X) and those with eight copies …
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Scaling Up Existing Skill Sets
UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from … Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and Systems Biology … experience in understanding the requirements and responsibilities of being part of a research institute. It has also …
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Introducing New Members of the JGI User Executive Committee
… members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska … to JGI users who feel that certain data sharing policies fail to represent the needs of large parts of the user … use-restricted data without contacting the lab that generated that data,” he said in his candidate statement. “I …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a Superfund site. The chemical … to understand the ERD process.  … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department …
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Tracing the Evolution of Shiitake Mushrooms
… often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for … Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory … This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could … to 2016, in Florida alone this disease caused an estimated $4 billion in losses. Currently, ninety percent of Florida …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number … a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 …
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New Research Sheds Light on Diversity in the Deep Sea
… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still support a unique array of microorganisms adapted to … and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential … researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon … JGI (CSP 605), the German Research Foundation (DFG, PE 2147/1-1), the European Union (FP7-People-2013-CIG, Grant No …
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Kjiersten Fagnan
Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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